Antigen

Antigen Class

Unclassified

Antigen

Unclassified

Cell type

Cell type Class

Blood

Cell type

Dendritic Cells

MeSH Description

ANTIGEN-PRESENTING CELLS of dendritic cell morphology found in the LYMPH NODES and other lymphoid tissues.

Sample

source_name

Bone marrow-derived dendritic cells, Cebpb and H3K4me3 ChIPs

strain/background

C57BL/6

tissue

Bone marrow-derived dendritic cells

sample type

primary culture

chip antibody1

Cebpb (Santa Cruz sc-150)

chip antibody2

H3K4me3 (Millipore 07-473)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Revert crosslinking and purify ChIPed DNA with AMPure beads. High-throughput reChIP, developed from the iChIP protocol (Lara-Astiaso, Weiner et al. Science 2014 [PMID 25103404]).

Sequencing Platform

instrument_model

NextSeq 500

mm10

Number of total reads

3170256

Reads aligned (%)

92.3

Duplicates removed (%)

33.6

Number of peaks

3374 (qval < 1E-05)

mm9

Number of total reads

3170256

Reads aligned (%)

91.8

Duplicates removed (%)

34.4

Number of peaks

3406 (qval < 1E-05)