Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Cardiovascular

Cell type

HMVEC

Primary Tissue

Blood Vessel

Tissue Diagnosis

Normal

Sample

source_name

HMVEC-dLy-Neo

biomaterial_provider

Lonza

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseDgf

datatype description

DNase Digital Footprinting

cell

HMVEC-dLy-Neo

cell organism

human

cell description

neonatal lymphatic microvascular endothelial cells, dermal-derived

cell karyotype

normal

cell lineage

mesoderm

cell sex

M

labexpid

DS13150

labversion

Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

Sequenced DNA Library

library_name

GSM1014533: UW_DnaseDgf_HMVEC-dLy-Neo

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

389329445

Reads aligned (%)

86.8

Duplicates removed (%)

49.1

Number of peaks

170962 (qval < 1E-05)

hg19

Number of total reads

389329445

Reads aligned (%)

86.2

Duplicates removed (%)

50.3

Number of peaks

169709 (qval < 1E-05)