SRX193602
GSM1014530: UW DnaseDgf HCF

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Cardiovascular
Cell type
HCF
Tissue
heart
Lineage
mesoderm
Description
cardiac fibroblasts

Attributes by original data submitter

Sample

source_name
HCF
biomaterial_provider
ScienCell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseDgf
datatype description
DNase Digital Footprinting
cell
HCF
cell organism
human
cell description
cardiac fibroblasts
cell karyotype
normal
cell lineage
mesoderm
cell sex
U
labexpid
DS12501
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

Sequenced DNA Library

library_name
GSM1014530: UW_DnaseDgf_HCF
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
409192151
Reads aligned (%)
91.5
Duplicates removed (%)
65.6
Number of peaks
218302 (qval < 1E-05)

hg19

Number of total reads
409192151
Reads aligned (%)
91.0
Duplicates removed (%)
66.5
Number of peaks
222728 (qval < 1E-05)

Base call quality data from DBCLS SRA