Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Cardiovascular

Cell type

HUVEC

Primary Tissue

Umbilical Cord

Tissue Diagnosis

Normal

Sample

source_name

HUVEC

biomaterial_provider

Lonza

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseDgf

datatype description

DNase Digital Footprinting

cell

HUVEC

cell organism

human

cell description

umbilical vein endothelial cells

cell karyotype

normal

cell lineage

mesoderm

cell sex

U

labexpid

DS10060

labversion

Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

Sequenced DNA Library

library_name

GSM1014528: UW_DnaseDgf_HUVEC

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

1184125568

Reads aligned (%)

53.9

Duplicates removed (%)

41.6

Number of peaks

129138 (qval < 1E-05)

hg19

Number of total reads

1184125568

Reads aligned (%)

53.4

Duplicates removed (%)

42.8

Number of peaks

128592 (qval < 1E-05)