Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Epidermis

Cell type

AG10803

Tissue

skin

Description

abdominal skin fibroblasts from apparently heathly 22 year old, "8% of the cells examined showing random chromosome loss, 2% showing random chromosome gain, and 2% showing 69,XYY" -Coriell

Sample

source_name

AG10803

biomaterial_provider

Coriell

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseDgf

datatype description

DNase Digital Footprinting

cell

AG10803

cell organism

human

cell description

abdominal skin fibroblasts from apparently heathly 22 year old, "8% of the cells examined showing random chromosome loss, 2% showing random chromosome gain, and 2% showing 69,XYY" -Coriell

cell sex

M

labexpid

DS12374

labversion

Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

Sequenced DNA Library

library_name

GSM1014527: UW_DnaseDgf_AG10803

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

406988309

Reads aligned (%)

91.0

Duplicates removed (%)

66.2

Number of peaks

231985 (qval < 1E-05)

hg19

Number of total reads

406988309

Reads aligned (%)

90.7

Duplicates removed (%)

67.1

Number of peaks

230950 (qval < 1E-05)