Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

GM12865

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed

Sample

source_name

GM12865

biomaterial_provider

Coriell

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseDgf

datatype description

DNase Digital Footprinting

cell

GM12865

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed

cell lineage

mesoderm

cell sex

F

labexpid

DS12436

labversion

Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

Sequenced DNA Library

library_name

GSM1014526: UW_DnaseDgf_GM12865

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

416209265

Reads aligned (%)

90.1

Duplicates removed (%)

56.9

Number of peaks

147615 (qval < 1E-05)

hg19

Number of total reads

416209265

Reads aligned (%)

81.2

Duplicates removed (%)

53.4

Number of peaks

151299 (qval < 1E-05)