SRX193582
GSM1014510: UW DnaseDgf HVMF

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Placenta
Cell type
HVMF
Tissue
connective
Description
villous mesenchymal fibroblast cells

Attributes by original data submitter

Sample

source_name
HVMF
biomaterial_provider
ScienCell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseDgf
datatype description
DNase Digital Footprinting
cell
HVMF
cell organism
human
cell description
villous mesenchymal fibroblast cells
cell karyotype
normal
cell sex
U
labexpid
DS13981
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

Sequenced DNA Library

library_name
GSM1014510: UW_DnaseDgf_HVMF
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
357575517
Reads aligned (%)
94.0
Duplicates removed (%)
54.1
Number of peaks
223435 (qval < 1E-05)

hg19

Number of total reads
357575517
Reads aligned (%)
93.4
Duplicates removed (%)
55.2
Number of peaks
223111 (qval < 1E-05)

Base call quality data from DBCLS SRA