SRX193580
GSM1014508: UW DnaseDgf HA-sp

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Neural
Cell type
HA-sp
Tissue
spinal cord
Lineage
ectoderm
Description
astrocytes spinal cord

Attributes by original data submitter

Sample

source_name
HA-sp
biomaterial_provider
ScienCell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseDgf
datatype description
DNase Digital Footprinting
cell
HA-sp
cell organism
human
cell description
astrocytes spinal cord
cell karyotype
normal
cell lineage
ectoderm
cell sex
U
labexpid
DS14790
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

Sequenced DNA Library

library_name
GSM1014508: UW_DnaseDgf_HA-sp
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
376102012
Reads aligned (%)
94.4
Duplicates removed (%)
61.2
Number of peaks
162129 (qval < 1E-05)

hg19

Number of total reads
376102012
Reads aligned (%)
93.7
Duplicates removed (%)
62.5
Number of peaks
165525 (qval < 1E-05)

Base call quality data from DBCLS SRA