SRX193422
GSM1018044: control H3K4me3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
lung adenocarcinoma cells:A549, the histone was h3k4me3,without treated
cell line
A549
chip antibody
H3K4me3
chip antibody manufacturer
Millipore

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34191743
Reads aligned (%)
95.8
Duplicates removed (%)
27.4
Number of peaks
41505 (qval < 1E-05)

hg19

Number of total reads
34191743
Reads aligned (%)
95.4
Duplicates removed (%)
27.7
Number of peaks
41437 (qval < 1E-05)

Base call quality data from DBCLS SRA