SRX1923331
GSM2229493: ChIP-seq H3K4me3 Mutu Replicate2; Homo sapiens; Human gammaherpesvirus 4; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
Mutu
NA
NA

Attributes by original data submitter

Sample

source_name
MutuI (EBV+ Burkitt lymphoma cell line)
cell line
MutuI
pathogen
Epstein-Barr virus
chip antibody
H3K4me3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was prepared and ChIP performed as described in the paper ChIP-seq libraries were prepared as described in the paper

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
201319369
Reads aligned (%)
97.9
Duplicates removed (%)
32.3
Number of peaks
25662 (qval < 1E-05)

hg19

Number of total reads
201319369
Reads aligned (%)
96.8
Duplicates removed (%)
33.3
Number of peaks
26141 (qval < 1E-05)

Base call quality data from DBCLS SRA