SRX1923319
GSM2229481: input Mutu Replicate2; Homo sapiens; Human gammaherpesvirus 4; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Mutu
NA
NA

Attributes by original data submitter

Sample

source_name
MutuI (EBV+ Burkitt lymphoma cell line)
cell line
MutuI
pathogen
Epstein-Barr virus
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was prepared and ChIP performed as described in the paper ChIP-seq libraries were prepared as described in the paper

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
189059057
Reads aligned (%)
98.4
Duplicates removed (%)
79.1
Number of peaks
1570 (qval < 1E-05)

hg19

Number of total reads
189059057
Reads aligned (%)
96.5
Duplicates removed (%)
80.2
Number of peaks
1778 (qval < 1E-05)

Base call quality data from DBCLS SRA