SRX192102
GSM1015794: CTCF M; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
TS cells_CTCF M
strain
CD1(ICR)
developmental stage
blastocysts
cell type
trophoblast stem (TS) cells
cell cycle stage
M
chip antibody
anti-CTCF
chip antibody vendor
Abcam
molecule subtype
ChIP DNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
36592271
Reads aligned (%)
86.5
Duplicates removed (%)
94.2
Number of peaks
287 (qval < 1E-05)

mm9

Number of total reads
36592271
Reads aligned (%)
86.4
Duplicates removed (%)
94.2
Number of peaks
282 (qval < 1E-05)

Base call quality data from DBCLS SRA