Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
TS cells_reChIP H2A M
strain
CD1(ICR)
developmental stage
blastocysts
cell type
trophoblast stem (TS) cells
cell cycle stage
M
chip antibody
anti-H2A
chip antibody vendor
Abcam
molecule subtype
ChIPreChIP DNA

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
37018124
Reads aligned (%)
89.1
Duplicates removed (%)
28.2
Number of peaks
242 (qval < 1E-05)

mm9

Number of total reads
37018124
Reads aligned (%)
89.0
Duplicates removed (%)
28.2
Number of peaks
221 (qval < 1E-05)

Base call quality data from DBCLS SRA