SRX192095
GSM1015787: reChIP H2A S; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
TS cells_reChIP H2A S
strain
CD1(ICR)
developmental stage
blastocysts
cell type
trophoblast stem (TS) cells
cell cycle stage
S
chip antibody
anti-H2A
chip antibody vendor
Abcam
molecule subtype
ChIPreChIP DNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
32336212
Reads aligned (%)
89.2
Duplicates removed (%)
19.7
Number of peaks
156 (qval < 1E-05)

mm9

Number of total reads
32336212
Reads aligned (%)
89.2
Duplicates removed (%)
19.7
Number of peaks
153 (qval < 1E-05)

Base call quality data from DBCLS SRA