Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
S2 cells
chip antibody
dCTCF antibody 68 (rat)
cell line
S2 DRSC: Schneider's line 2
treatment
control

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
36805761
Reads aligned (%)
21.0
Duplicates removed (%)
75.8
Number of peaks
8680 (qval < 1E-05)

dm6

Number of total reads
36805761
Reads aligned (%)
20.0
Duplicates removed (%)
76.9
Number of peaks
7755 (qval < 1E-05)

Base call quality data from DBCLS SRA