Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa
cell line
HeLa
cell type
Human cervical adenocarcinoma
chip antibody
myc (Active Motif, #91203)
treatment
Hypoxia (0.1% O2)
geo_loc_name
missing
collection_date
missing

Sequenced DNA Library

library_name
GSM6994853
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cell samples for ChIP-Seq were prepared according to Active Motif's Epigenetic Services ChIP Cell Fixation protocol and then snap-frozen and sent to Active Motif for processing and analysis. Library construction was performed by Active Motif

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
41580679
Reads aligned (%)
91.5
Duplicates removed (%)
18.6
Number of peaks
5726 (qval < 1E-05)

hg19

Number of total reads
41580679
Reads aligned (%)
91.2
Duplicates removed (%)
19.2
Number of peaks
5709 (qval < 1E-05)

Base call quality data from DBCLS SRA