SRX191054
GSM1014196: UW DnaseSeq 3134 immortalized RIII

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Breast
Cell type
3134
Tissue
Mammary
Lineage
cellLine
Description
Mammary

Attributes by original data submitter

Sample

source_name
3134
biomaterial_provider
Stam lab
lab
UW-m
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseSeq
datatype description
DNaseI HS Sequencing
cell
3134
cell organism
mouse
cell description
Mammary
cell sex
M
age
immortalized
age description
Immortal cells
strain
RIII
strain description
High mammary tumor incidence in unfostered substrains.
age
immortalized
age description
Immortal cells
labversion
1,Hotspot-v5.1,lmax-v1.0,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate
1,2
strain description
High mammary tumor incidence in unfostered substrains.

Sequenced DNA Library

library_name
GSM1014196: UW_DnaseSeq_3134_immortalized_RIII
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
71241553
Reads aligned (%)
82.6
Duplicates removed (%)
38.0
Number of peaks
41149 (qval < 1E-05)

mm9

Number of total reads
71241553
Reads aligned (%)
82.5
Duplicates removed (%)
38.0
Number of peaks
41144 (qval < 1E-05)

Base call quality data from DBCLS SRA