Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Embryo

Cell type

Hindlimb

MeSH Description

Either of two extremities of four-footed non-primate land animals. It usually consists of a FEMUR; TIBIA; and FIBULA; tarsals; METATARSALS; and TOES. (From Storer et al., General Zoology, 6th ed, p73)

Sample

source_name

HindlimbBud

biomaterial_provider

Selleri lab, Cornell

lab

UW-m

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

cell

HindlimbBud

cell organism

mouse

cell description

embryo hindlimb buds

cell sex

M

age

E11.5

age description

Embryonic day 11.5

strain

CD-1

strain description

Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.

age

E11.5

age description

Embryonic day 11.5

labversion

1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75

replicate

1,2

strain description

Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.

Sequenced DNA Library

library_name

ERROR: cannot retrieve data from NCBI: too many requests

library_strategy

ERROR: cannot retrieve data from NCBI: too many requests

library_source

ERROR: cannot retrieve data from NCBI: too many requests

library_selection

ERROR: cannot retrieve data from NCBI: too many requests

library_construction_protocol

ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model

ERROR: cannot retrieve data from NCBI: too many requests

cycle_sequence

ERROR: cannot retrieve data from NCBI: too many requests

cycle_count

ERROR: cannot retrieve data from NCBI: too many requests

flow_sequence

ERROR: cannot retrieve data from NCBI: too many requests

flow_count

ERROR: cannot retrieve data from NCBI: too many requests

key_sequence

ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads

89112701

Reads aligned (%)

94.1

Duplicates removed (%)

18.3

Number of peaks

63244 (qval < 1E-05)

mm9

Number of total reads

89112701

Reads aligned (%)

93.9

Duplicates removed (%)

18.2

Number of peaks

62904 (qval < 1E-05)