Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

416B

Tissue

Blood

Lineage

cellLine

Description

myeloid progenitor cells, CD34+

Sample

source_name

416B

biomaterial_provider

Stam lab

lab

UW-m

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

cell

416B

cell organism

mouse

cell description

myeloid progenitor cells, CD34+

cell sex

M

age

immortalized

age description

Immortal cells

strain

B6D2F1/J

strain description

Derived from cross between C57BL/6J Female x DBA/2J Male (C57BL/6xDBA/2)F1.

age

immortalized

age description

Immortal cells

labversion

1,Hotspot-v5.1,lmax-v1.0,WindowDensity-bin20-win+/-75

replicate

1,2

strain description

Derived from cross between C57BL/6J Female x DBA/2J Male (C57BL/6xDBA/2)F1.

Sequenced DNA Library

library_name

GSM1014163: UW_DnaseSeq_416B_immortalized_B6D2F1/J

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

mm10

Number of total reads

83197542

Reads aligned (%)

95.7

Duplicates removed (%)

34.9

Number of peaks

78741 (qval < 1E-05)

mm9

Number of total reads

83197542

Reads aligned (%)

95.5

Duplicates removed (%)

34.9

Number of peaks

78828 (qval < 1E-05)