SRX191016
GSM1014158: UW DnaseSeq EPC (CD117+,CD71+,TER119-) E14.5 CD-1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Embryo
Cell type
Embryonic liver
NA
NA

Attributes by original data submitter

Sample

source_name
EPC_(CD117+,CD71+,TER119-)
biomaterial_provider
M. Bender, R. Byron (Fred Hutchinson Cancer Research Center)
lab
UW-m
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseSeq
datatype description
DNaseI HS Sequencing
cell
EPC_(CD117+,CD71+,TER119-)
cell organism
mouse
cell description
liver fraction CD117+,CD71+,TER119-
cell sex
M
age
E14.5
age description
Embryonic day 14.5
strain
CD-1
strain description
Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
age
E14.5
age description
Embryonic day 14.5
labexpid
DS20994
labversion
1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate
1
strain description
Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.

Sequenced DNA Library

library_name
GSM1014158: UW_DnaseSeq_EPC_(CD117+,CD71+,TER119-)_E14.5_CD-1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
41260303
Reads aligned (%)
85.5
Duplicates removed (%)
19.0
Number of peaks
46612 (qval < 1E-05)

mm9

Number of total reads
41260303
Reads aligned (%)
85.3
Duplicates removed (%)
19.0
Number of peaks
46628 (qval < 1E-05)

Base call quality data from DBCLS SRA