Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Neural

Cell type

SK-N-SH

Primary Tissue

Brain

Tissue Diagnosis

Neuroblastoma

Sample

GEO Accession

GSM1010883

antibody

RevXlinkChromatin

cell description

neuroblastoma, newly promoted to tier 2: not in 2011 analysis, the SK-N-SH line was established from a neuroblastoma in a 4 year old individual.

cell karyotype

cancer

cell lineage

ectoderm

cell organism

human

cell sex

F

cell

SK-N-SH

controlid

SL12791,SL16761,SL13505,SL16760

datatype description

Chromatin IP Sequencing

datatype

ChipSeq

lab description

Myers - Hudson Alpha Institute for Biotechnology

lab

HudsonAlpha

labexpid

SL12791,SL16761,SL13505,SL16760

protocol description

Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)

protocol

v042211.1

replicate

1,3,2,4

treatment description

No special treatment or protocol applies

treatment

None

Sequenced DNA Library

library_name

GSM1010883: HudsonAlpha_ChipSeq_SK-N-SH_RevXlinkChromatin_v042211.1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

115203255

Reads aligned (%)

94.9

Duplicates removed (%)

4.9

Number of peaks

8337 (qval < 1E-05)

hg19

Number of total reads

115203255

Reads aligned (%)

94.3

Duplicates removed (%)

6.0

Number of peaks

7766 (qval < 1E-05)