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Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: SPI1
wikigenes
PDBj
CellType: HL-60
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX190299
GSM1010843: HudsonAlpha ChipSeq HL-60 PU.1 v042211.1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SPI1
Cell type
Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia
Attributes by original data submitter
Sample
GEO Accession
GSM1010843
antibody antibodydescription
Rabbit Polyclonal IgG. Antibody Target: PU1
antibody targetdescription
PU.1 (H-135)
antibody vendorid
sc-22805
antibody vendorname
Santa Cruz Biotechnology
antibody
PU.1
cell description
promyelocytic leukemia cells, (PMID: 276884)
cell karyotype
cancer
cell lineage
mesoderm
cell organism
human
cell sex
F
cell
HL-60
controlid
SL12792,SL16759
datatype description
Chromatin IP Sequencing
datatype
ChipSeq
lab description
Myers - Hudson Alpha Institute for Biotechnology
lab
HudsonAlpha
labexpid
SL12629,SL14712
protocol description
Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)
protocol
v042211.1
replicate
1,2
softwareversion
MACS
treatment description
No special treatment or protocol applies
treatment
None
Sequenced DNA Library
library_name
GSM1010843: HudsonAlpha_ChipSeq_HL-60_PU.1_v042211.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
49466528
Reads aligned (%)
79.7
Duplicates removed (%)
14.0
Number of peaks
88492 (qval < 1E-05)
hg38
Number of total reads
49466528
Reads aligned (%)
81.1
Duplicates removed (%)
13.0
Number of peaks
88800 (qval < 1E-05)
Base call quality data from
DBCLS SRA