Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Pancreas

Cell type

PANC-1

Tissue

Pancreas/Duct

Disease

Epithelioid Carcinoma

Sample

GEO Accession

GSM1010796

antibody

RevXlinkChromatin

cell description

pancreatic carcinoma, (PMID: 1140870) PANC-1 was established from a pancreatic carcinoma, which was extracted via pancreatico-duodenectomy specimen from a 56-year-old Caucasian individual. Malignancy of this cell line was verified via in vitro and in vivo assays.

cell karyotype

cancer

cell lineage

endoderm

cell organism

human

cell sex

M

cell

PANC-1

controlid

SL3776,SL2340

datatype description

Chromatin IP Sequencing

datatype

ChipSeq

lab description

Myers - Hudson Alpha Institute for Biotechnology

lab

HudsonAlpha

labexpid

SL3776,SL2340

protocol description

2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

protocol

v041610.1

replicate

1,2

treatment description

No special treatment or protocol applies

treatment

None

Sequenced DNA Library

library_name

GSM1010796: HudsonAlpha_ChipSeq_PANC-1_RevXlinkChromatin_v041610.1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

117194289

Reads aligned (%)

91.9

Duplicates removed (%)

28.6

Number of peaks

1485 (qval < 1E-05)

hg19

Number of total reads

117194289

Reads aligned (%)

91.3

Duplicates removed (%)

30.1

Number of peaks

1468 (qval < 1E-05)