Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM12875

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed

Sample

source_name

GM12875

biomaterial_provider

GM12875

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM12875

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000462

labexpid

DS13589

labversion

Bowtie 0.12.5

replicate

1

Sequenced DNA Library

library_name

GSM945260: UW_ChipSeq_GM12875_Input

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

17054809

Reads aligned (%)

98.5

Duplicates removed (%)

1.5

Number of peaks

863 (qval < 1E-05)

hg19

Number of total reads

17054809

Reads aligned (%)

97.6

Duplicates removed (%)

2.8

Number of peaks

1142 (qval < 1E-05)