SRX190012
GSM945229: UW ChipSeq CD20+ RO01778 H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
CD20+ B cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD20+_RO01778
biomaterial_provider
Rajinder Kaul, UW
donor_id
ENCDO114AAA
biomaterial_type
primary cell
cell_type
B cell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
CD20+_RO01778
cell organism
human
cell description
B cells, caucasian, draw number 1, newly promoted to tier 2: not in 2011 analysis
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
antibody
H3K4me3
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription
Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname
Millipore
antibody vendorid
07-473
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH002170
labexpid
DS18985
labversion
Bowtie 0.12.7
replicate
1

Sequenced DNA Library

library_name
GSM945229: UW_ChipSeq_CD20+_RO01778_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
46485920
Reads aligned (%)
97.7
Duplicates removed (%)
25.0
Number of peaks
33943 (qval < 1E-05)

hg19

Number of total reads
46485920
Reads aligned (%)
97.3
Duplicates removed (%)
25.6
Number of peaks
34010 (qval < 1E-05)

Base call quality data from DBCLS SRA