SRX189978
GSM945195: UW ChipSeq CD20+ RO01794 Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD20+ B cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD20+_RO01794
biomaterial_provider
Rajinder Kaul, UW
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
CD20+_RO01794
cell organism
human
cell description
B cells, African American, draw number 1, newly promoted to tier 2: not in 2011 analysis
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH002172
labexpid
DS18982
labversion
Bowtie 0.12.7
replicate
1

Sequenced DNA Library

library_name
GSM945195: UW_ChipSeq_CD20+_RO01794_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28048626
Reads aligned (%)
98.9
Duplicates removed (%)
2.0
Number of peaks
970 (qval < 1E-05)

hg19

Number of total reads
28048626
Reads aligned (%)
97.8
Duplicates removed (%)
3.3
Number of peaks
1144 (qval < 1E-05)

Base call quality data from DBCLS SRA