SRX189968
GSM945185: UW ChipSeq H7-hESC H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H7
NA
NA

Attributes by original data submitter

Sample

source_name
H7-hESC
biomaterial_provider
WiCell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
H7-hESC
cell organism
human
cell description
undifferentiated embryonic stem cells
cell lineage
inner cell mass
cell sex
U
antibody
H3K4me3
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription
Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname
Millipore
antibody vendorid
07-473
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000926
labexpid
DS13427
labversion
Bowtie 0.12.5
replicate
1

Sequenced DNA Library

library_name
GSM945185: UW_ChipSeq_H7-hESC_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40080080
Reads aligned (%)
85.4
Duplicates removed (%)
34.3
Number of peaks
41395 (qval < 1E-05)

hg19

Number of total reads
40080080
Reads aligned (%)
85.2
Duplicates removed (%)
34.7
Number of peaks
41358 (qval < 1E-05)

Base call quality data from DBCLS SRA