SRX189960
GSM945177: UW ChipSeq AG04450 H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
AG04450
Tissue
lung
Lineage
endoderm
Description
fetal lung fibroblast

Attributes by original data submitter

Sample

source_name
AG04450
biomaterial_provider
AG04450
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
AG04450
cell organism
human
cell description
fetal lung fibroblast
cell karyotype
normal
cell lineage
endoderm
cell sex
M
antibody
H3K4me3
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription
Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname
Millipore
antibody vendorid
07-473
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000930
labexpid
DS15740
labversion
Bowtie 0.12.7
replicate
1

Sequenced DNA Library

library_name
GSM945177: UW_ChipSeq_AG04450_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
58206376
Reads aligned (%)
97.0
Duplicates removed (%)
28.8
Number of peaks
40170 (qval < 1E-05)

hg19

Number of total reads
58206376
Reads aligned (%)
96.8
Duplicates removed (%)
29.2
Number of peaks
41737 (qval < 1E-05)

Base call quality data from DBCLS SRA