SRX189959
GSM945176: UW ChipSeq AG04449 Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Epidermis
Cell type
AG04449
Tissue
skin
Description
fetal buttock/thigh fibroblast

Attributes by original data submitter

Sample

source_name
AG04449
biomaterial_provider
AG04449
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
AG04449
cell organism
human
cell description
fetal buttock/thigh fibroblast
cell karyotype
normal
cell sex
M
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000928
labexpid
DS15908
labversion
Bowtie 0.12.7
replicate
1

Sequenced DNA Library

library_name
GSM945176: UW_ChipSeq_AG04449_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19802273
Reads aligned (%)
97.5
Duplicates removed (%)
1.7
Number of peaks
648 (qval < 1E-05)

hg19

Number of total reads
19802273
Reads aligned (%)
96.2
Duplicates removed (%)
2.9
Number of peaks
810 (qval < 1E-05)

Base call quality data from DBCLS SRA