SRX189956
GSM945173: UW ChipSeq AG09319 Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
AG09319
Tissue
gingival
Description
gum tissue fibroblasts from apparently heathly 24 year old

Attributes by original data submitter

Sample

source_name
AG09319
biomaterial_provider
AG09319
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
AG09319
cell organism
human
cell description
gum tissue fibroblasts from apparently heathly 24 year old
cell karyotype
normal
cell sex
F
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000934
labexpid
DS15910
labversion
Bowtie 0.12.7
replicate
1

Sequenced DNA Library

library_name
GSM945173: UW_ChipSeq_AG09319_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28146638
Reads aligned (%)
98.6
Duplicates removed (%)
1.9
Number of peaks
751 (qval < 1E-05)

hg19

Number of total reads
28146638
Reads aligned (%)
97.4
Duplicates removed (%)
3.3
Number of peaks
1004 (qval < 1E-05)

Base call quality data from DBCLS SRA