ChIP-Atlas: SRX189952

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Lung
Cell type: AG04450
Tissue: lung
Lineage: endoderm
Description: fetal lung fibroblast

Attributes by original data submitter

Sample

source_name: AG04450
biomaterial_provider: AG04450
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: AG04450
cell organism: human
cell description: fetal lung fibroblast
cell karyotype: normal
cell lineage: endoderm
cell sex: M
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000930
labexpid: DS15909
labversion: Bowtie 0.12.7
replicate: 1

Sequenced DNA Library

library_name: GSM945169: UW_ChipSeq_AG04450_Input
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 22485486
Reads aligned (%): 97.9
Duplicates removed (%): 1.8
Number of peaks: 687 (qval < 1E-05)

hg19

Number of total reads: 22485486
Reads aligned (%): 96.7
Duplicates removed (%): 3.1
Number of peaks: 875 (qval < 1E-05)

Base call quality data from DBCLS SRA