Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Lung
Cell type
AG04450
Tissue
lung
Lineage
endoderm
Description
fetal lung fibroblast

Attributes by original data submitter

Sample

source_name
AG04450
biomaterial_provider
Coriell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
AG04450
cell organism
human
cell description
fetal lung fibroblast
cell karyotype
normal
cell lineage
endoderm
cell sex
M
antibody
H3K27ac
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K27ac
antibody targetdescription
Histone H3 (acetyl K27). As with H3K9ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation has can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.
antibody vendorname
abcam
antibody vendorid
ab4729
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
AG04450/None/Input/std
labexpid
DS21479
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate
1

Sequenced DNA Library

library_name
GSM1010912: UW_ChipSeq_AG04450_H3K27ac
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
22078201
Reads aligned (%)
76.4
Duplicates removed (%)
4.0
Number of peaks
22874 (qval < 1E-05)

hg19

Number of total reads
22078201
Reads aligned (%)
75.8
Duplicates removed (%)
4.8
Number of peaks
22922 (qval < 1E-05)

Base call quality data from DBCLS SRA