Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa cells
cell line
HeLa
phenotype
adherent

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
HeLa lysates were prepared and nucleosomes extracted via Mnase digestion. Nucleosomes were incubated with GST:Repo-Man and GST alone. DNA was extracted and sent to sequencing. Libraries were prepared using Wafergen’s PrepX ILM DNA Library Kits. Standard Illumina adapters were used.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
85233905
Reads aligned (%)
97.6
Duplicates removed (%)
6.4
Number of peaks
3915 (qval < 1E-05)

hg19

Number of total reads
85233905
Reads aligned (%)
96.8
Duplicates removed (%)
7.3
Number of peaks
3595 (qval < 1E-05)

Base call quality data from DBCLS SRA