SRX189752
GSM1009930: H het IgG; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic head
NA
NA

Attributes by original data submitter

Sample

source_name
E8.5 head
strain
C57BL/6
age
E8.5
genotype/variation
Heterozygote
chip antibody
Rabbit IgG, sigma
body part
head

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17064580
Reads aligned (%)
86.1
Duplicates removed (%)
63.1
Number of peaks
254 (qval < 1E-05)

mm9

Number of total reads
17064580
Reads aligned (%)
85.9
Duplicates removed (%)
63.2
Number of peaks
266 (qval < 1E-05)

Base call quality data from DBCLS SRA