Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Others

Cell type

Urothelia

Tissue

urothelium

Description

primary ureter cell culture of urothelial cells derived from a 12 year-old girl and immortalized by transfection with a temperature-sensitive SV-40 large T antigen gene

Sample

source_name

Urothelia

biomaterial_provider

Dr. D Sens at University of N. Dakota

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

labversion

baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female

replicate

1,2

cell

Urothelia

cell organism

human

cell description

primary ureter cell culture of urothelial cells derived from a 12 year-old girl and immortalized by transfection with a temperature-sensitive SV-40 large T antigen gene

cell karyotype

normal

cell sex

F

labversion

baseAlignCounts.pl v 1

Sequenced DNA Library

library_name

GSM1008605: Duke_DnaseSeq_Urothelia

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

270440039

Reads aligned (%)

0.3

Duplicates removed (%)

17.6

Number of peaks

732 (qval < 1E-05)

hg19

Number of total reads

270440039

Reads aligned (%)

0.3

Duplicates removed (%)

17.9

Number of peaks

725 (qval < 1E-05)