Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
DnaseSeq
datatype description
DNaseI HS Sequencing
labversion
baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_K562
replicate
1,3,2
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
treatment
G1_phase
treatment description
Cells were synchronized and subjected to FACS sorting based on DNA content with the peak of the single DNA content peak taken as G1 cells. The intermediate DNA content cells between G2-M and G1 phases were excluded. (Crawford)
labversion
baseAlignCounts.pl v 1

Sequenced DNA Library

library_name
GSM1008602: Duke_DnaseSeq_K562_G1_phase
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
575485446
Reads aligned (%)
0.0
Duplicates removed (%)
11.4
Number of peaks
187 (qval < 1E-05)

hg19

Number of total reads
575485446
Reads aligned (%)
0.0
Duplicates removed (%)
11.1
Number of peaks
188 (qval < 1E-05)

Base call quality data from DBCLS SRA