Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

B cells

NA

NA

Sample

source_name

GC_B_cell

biomaterial_provider

Dr. Yanwen Jiang

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

labversion

baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05

replicate

1,2

cell

GC_B_cell

cell organism

human

cell description

Germinal center B cells (CD77+) isolated from de-identified tonsillectomy

cell karyotype

normal

cell sex

U

labversion

baseAlignCounts.pl v 1

Sequenced DNA Library

library_name

GSM1008579: Duke_DnaseSeq_GC_B_cell

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

267590485

Reads aligned (%)

0.4

Duplicates removed (%)

16.1

Number of peaks

1896 (qval < 1E-05)

hg19

Number of total reads

267590485

Reads aligned (%)

0.3

Duplicates removed (%)

16.4

Number of peaks

1904 (qval < 1E-05)