Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

CD4+ T cells

NA

NA

Sample

source_name

Adult_CD4_Th0

biomaterial_provider

Dr. David Randolph at University of Alabama, Birmingham

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

labversion

baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05

replicate

1,2

cell

Adult_CD4_Th0

cell organism

human

cell description

CD4+ cells isolated from human blood and enriched for Th0 populations

cell karyotype

normal

cell lineage

mesoderm

cell sex

B

labversion

baseAlignCounts.pl v 1

Sequenced DNA Library

library_name

GSM1008572: Duke_DnaseSeq_Adult_CD4_Th0

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

150785470

Reads aligned (%)

0.9

Duplicates removed (%)

18.8

Number of peaks

158 (qval < 1E-05)

hg19

Number of total reads

150785470

Reads aligned (%)

0.9

Duplicates removed (%)

19.0

Number of peaks

156 (qval < 1E-05)