Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Cardiovascular

Cell type

Heart

MeSH Description

The hollow, muscular organ that maintains the circulation of the blood.

Sample

source_name

Heart_OC

biomaterial_provider

NICHD

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

labversion

baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05

replicate

1,2

cell

Heart_OC

cell organism

human

cell description

Primary frozen heart tissue from NICHD donor IDs 1104 (Rep B1 DNase), 602 (Rep B2 DNase), 1442 (Rep B3 DNase), 1863 (Rep B1 FAIRE), 4548 (Rep B2 FAIRE)

cell karyotype

normal

cell sex

B

labversion

baseAlignCounts.pl v 1

Sequenced DNA Library

library_name

GSM1008559: Duke_DnaseSeq_Heart_OC

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

377949764

Reads aligned (%)

0.0

Duplicates removed (%)

15.9

Number of peaks

257 (qval < 1E-05)

hg19

Number of total reads

377949764

Reads aligned (%)

0.0

Duplicates removed (%)

16.4

Number of peaks

256 (qval < 1E-05)