Antigen

Antigen Class

Bisulfite-Seq

Antigen

Bisulfite-Seq

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

source_name

Liver

tissue

Liver

flow_cell

30393455

Sex

male

strain

C57BL6/6JRj

Sequenced DNA Library

library_strategy

Bisulfite-Seq

library_source

GENOMIC

library_selection

RANDOM

library_construction_protocol

DNA isolation was performed using standard phenol chloroform methods. Bisulfite padlock probes were designed using the ppDesigner 2.0 software (22306810) for mouse chromosome 7 (mm10). The probe and library preparation was performed based on previously published protocol (ibid).

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

4567778

Reads aligned (%)

100.0

Coverage rate (×)

0.4

Number of hyper MRs

1781 (qval < 1E-05)

mm9

Number of total reads

4567778

Reads aligned (%)

99.9

Coverage rate (×)

0.4

Number of hyper MRs

1779 (qval < 1E-05)