Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Digestive tract

Cell type

GP5d

Primary Tissue

Colon

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

Colorectal cancer cell line

cell line

GP5d

cell type

Colorectal cancer cell line

genetic modification

none

library strategy

DNase I-seq

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

Libraries were purified using QIA quick column (DNase I-seq, ATAC-seq, Targeted RNA-/DNA-seq, and 4C-seq), QIA minElute column (ChIP-seq) or SPRI beads (ATAC-seq). Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

104050960

Reads aligned (%)

99.6

Duplicates removed (%)

15.7

Number of peaks

114177 (qval < 1E-05)

hg19

Number of total reads

104050960

Reads aligned (%)

99.6

Duplicates removed (%)

15.8

Number of peaks

113945 (qval < 1E-05)