SRX189082
GSM1007996: ChIP seq H3K4me3 A95; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
WI-38
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
WI-38 cell culture
cell type
hTERT-immortalized WI-38 primary human lung fibroblasts
cell line
WI-38
antibody
H3K4me3
antibody manufacturer
Abcam
passage
95

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12994024
Reads aligned (%)
79.8
Duplicates removed (%)
37.4
Number of peaks
19029 (qval < 1E-05)

hg19

Number of total reads
12994024
Reads aligned (%)
79.5
Duplicates removed (%)
37.7
Number of peaks
19002 (qval < 1E-05)

Base call quality data from DBCLS SRA