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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Colon
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX188965
GSM1006888: UT-A ChipSeq Colon OC Input
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Digestive tract
Cell type
Colon
Tissue
Colon
Lineage
Tissue
Description
Colon
Attributes by original data submitter
Sample
source_name
Colon_OC
biomaterial_provider
NCTC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
controlid
wgEncodeEH003445
labversion
fseq v 1.84
cell
Colon_OC
cell organism
human
cell description
Primary frozen colon tissue from NCTC donor IDs 10-0005A (Rep B1) and 10-0170A (Rep B2), African American and caucasian
cell karyotype
normal
cell sex
B
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid
wgEncodeEH003445
Sequenced DNA Library
library_name
GSM1006888: UT-A_ChipSeq_Colon_OC_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
13745718
Reads aligned (%)
45.1
Duplicates removed (%)
6.3
Number of peaks
208 (qval < 1E-05)
hg19
Number of total reads
13745718
Reads aligned (%)
44.7
Duplicates removed (%)
6.9
Number of peaks
260 (qval < 1E-05)
Base call quality data from
DBCLS SRA