Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM20000

Tissue

blood

Lineage

mesoderm

Description

lymphoblastoid cell line, De Lange phenotype; developmental delay; profound retardation

Sample

source_name

GM20000

biomaterial_provider

Coriell

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

controlid

wgEncodeEH003449

labversion

fseq v 1.84

cell

GM20000

cell organism

human

cell description

lymphoblastoid cell line, De Lange phenotype; developmental delay; profound retardation

cell karyotype

affected

cell lineage

mesoderm

cell sex

M

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

controlid

wgEncodeEH003449

Sequenced DNA Library

library_name

GSM1006884: UT-A_ChipSeq_GM20000_Input

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

31368964

Reads aligned (%)

53.6

Duplicates removed (%)

6.6

Number of peaks

760 (qval < 1E-05)

hg19

Number of total reads

31368964

Reads aligned (%)

52.9

Duplicates removed (%)

7.7

Number of peaks

810 (qval < 1E-05)