Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Blood

Cell type

GM13977

Tissue

blood

Lineage

mesoderm

Description

lymphoblastoid cell line, Clinically affected; microcephaly; low frontal hairline; synophris; "penciled" arched eyebrows; short nose; crescent shaped mouth; hirsutism; micromelia; short thumbs; mental retardation; clinically normal monozygotic twin sister is GM13976

Sample

source_name

GM13977

biomaterial_provider

Coriell

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

antibody antibodydescription

Rabbit polyclonal. Antibody Target: CTCF

antibody targetdescription

CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

antibody vendorname

Millipore

antibody vendorid

07-729

controlid

wgEncodeEH003444

labversion

baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_GM13977

replicate

1,2

cell sex

F

antibody

CTCF

antibody antibodydescription

rabbit polyclonal. Antibody Target: CTCF

antibody targetdescription

CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

antibody vendorname

Millipore

antibody vendorid

07-729

controlid

wgEncodeEH003444

labversion

baseAlignCounts.pl v 1

replicate

1

Sequenced DNA Library

library_name

GSM1006869: UT-A_ChipSeq_GM13977_CTCF

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

41723764

Reads aligned (%)

84.9

Duplicates removed (%)

15.4

Number of peaks

43358 (qval < 1E-05)

hg19

Number of total reads

41723764

Reads aligned (%)

83.7

Duplicates removed (%)

16.2

Number of peaks

44987 (qval < 1E-05)