SRX188844
GSM1006723: 48hr IgG ChipSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
Chromatin IP against 48hr_IgG
cell type
H1 embryonic stem cells
chip antibody
IgG
antibody catalog number
Millipore 12-370
drug treatment
Activin
drug concentration
50ng/ml
duration of treatment
48hr

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20157934
Reads aligned (%)
89.2
Duplicates removed (%)
17.7
Number of peaks
517 (qval < 1E-05)

hg19

Number of total reads
20157934
Reads aligned (%)
88.6
Duplicates removed (%)
18.5
Number of peaks
716 (qval < 1E-05)

Base call quality data from DBCLS SRA