Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Mafk

Cell type

Cell type Class
Blood
Cell type
MEL
Tissue
Blood
Lineage
cellLine
Description
Leukemia (K562 analog)

Attributes by original data submitter

Sample

source_name
MEL
biomaterial_provider
Weissman lab
lab
Stanford-m
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
MEL
cell organism
mouse
cell description
Leukemia (K562 analog)
cell sex
M
antibody
MafK_(ab50322)
antibody antibodydescription
Rabbit polyclonal. Raised against synthetic peptide: TTNPKPNKALKVKKEA conjugated to KLH by a C-terminal Cysteine residue linker, corresponding to amino acids 2-17 of Human MAFK. Antibody Target: MafK
antibody targetdescription
NFE2 DNA-binding activity consists of a heterodimer containing an 18-kD Maf protein (MafF, MafG, or MafK) and p45. Both subunits are members of the activator protein-1 superfamily of basic leucine zipper (bZIP)proteins. Since they lack a putative transactivation domain, small Mafs behave as transcriptional repressors when they dimerize among themselves. They serve as transcriptional activators by dimerizing with other (usually larger) bZip proteins and recruiting them to specific DNA-binding sites.
antibody vendorname
Abcam
antibody vendorid
ab50322
treatment
DMSO_2.0pct
treatment description
5 d with 2% Dimethyl sufloxide (DMSO) (Weissman)
control
std
control description
Standard input signal for most experiments.
age
immortalized
age description
Immortal cells
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM002791
labversion
PeakSeq1.0
strain
Unknown
strain description
Unknown strain origin

Sequenced DNA Library

library_name
GSM1003806: Stanford_ChipSeq_MEL_MafK_(ab50322)_DMSO_2.0pct_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
42038116
Reads aligned (%)
95.3
Duplicates removed (%)
17.2
Number of peaks
4359 (qval < 1E-05)

mm9

Number of total reads
42038116
Reads aligned (%)
95.1
Duplicates removed (%)
17.3
Number of peaks
4292 (qval < 1E-05)

Base call quality data from DBCLS SRA