Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Hcfc1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ES-E14
biomaterial_provider
Santos lab
lab
Stanford-m
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
ES-E14
cell organism
mouse
cell description
mouse embryonic stem cell line E14
cell sex
M
antibody
HCFC1_(NB100-68209)
antibody antibodydescription
Rabbit polyclonalantibody against residue 1700 and 1750 of human host cell factor C1
antibody targetdescription
The epitope recognized by this antibody maps to a region between residue 1700 and 1750 of human host cell factor C1 (VP16-accessory protein).
antibody vendorname
NovusBio
antibody vendorid
NB100-68209
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
age
E0
age description
Embryonic day 0 (stem cell)
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM002788
strain
129/Ola
strain description
The mice have yellow coats and late onset severe vacuolation in brain (700+ days). Inbred strain used as a control group to compare with null PrP mice.

Sequenced DNA Library

library_name
GSM1003799: Stanford_ChipSeq_ES-E14_HCFC1_(NB100-68209)_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
52822825
Reads aligned (%)
91.5
Duplicates removed (%)
17.8
Number of peaks
14853 (qval < 1E-05)

mm9

Number of total reads
52822825
Reads aligned (%)
91.1
Duplicates removed (%)
17.7
Number of peaks
14787 (qval < 1E-05)

Base call quality data from DBCLS SRA