Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ets1

Cell type

Cell type Class
Blood
Cell type
CH12
Tissue
Blood
Lineage
cellLine
Description
B-cell lymphoma (GM12878 analog)

Attributes by original data submitter

Sample

source_name
CH12
biomaterial_provider
Weissman lab
lab
Stanford-m
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
CH12
cell organism
mouse
cell description
B-cell lymphoma (GM12878 analog)
cell sex
F
antibody
ETS1
antibody antibodydescription
Rabbit polyclonal IgG. Antibody Target: ETS1
antibody targetdescription
ETS transcriptions factors, such as ETS1, regulate numerous genes and are involved in stem cell development, cell senescence and death, and tumorigenesis
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-350
treatment
None
treatment description
No special treatment or protocol applies
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
age
immortalized
age description
Immortal cells
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEM001939
labversion
PeakSeq1.0
strain
B10.H-2aH-4bp/Wts
strain description
Derived by inbreeding from selected F2 progeny of B10.A X B10.129

Sequenced DNA Library

library_name
GSM1003774: Stanford_ChipSeq_CH12_ETS1_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
54533955
Reads aligned (%)
96.0
Duplicates removed (%)
23.3
Number of peaks
42114 (qval < 1E-05)

mm9

Number of total reads
54533955
Reads aligned (%)
95.8
Duplicates removed (%)
23.3
Number of peaks
42139 (qval < 1E-05)

Base call quality data from DBCLS SRA