Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Breast

Cell type

3134

Tissue

Mammary

Lineage

cellLine

Description

Mammary

Sample

source_name

3134

biomaterial_provider

Stam lab

lab

UW-m

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseDgf

datatype description

DNase Digital Footprinting

cell

3134

cell organism

mouse

cell description

Mammary

cell sex

M

age

immortalized

age description

Immortal cells

age

immortalized

age description

Immortal cells

labexpid

DS8497

labversion

Hotspot-v5.2

replicate

1

strain

RIII

strain description

High mammary tumor incidence in unfostered substrains.

Sequenced DNA Library

library_name

GSM1003816: UW_DnaseDgf_3134_immortalized

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

236570640

Reads aligned (%)

90.6

Duplicates removed (%)

59.8

Number of peaks

66066 (qval < 1E-05)

mm9

Number of total reads

236570640

Reads aligned (%)

90.3

Duplicates removed (%)

59.7

Number of peaks

66036 (qval < 1E-05)